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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53872127_53877344_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53872127 - 53877344
Intron Length:
5218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CCTTTTTTAATA
Flanking Amino Acid:
KDGDGKIGADEFATLVAES*
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
81.4
31.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.3
0.77
0.7
76.7
32
Minor 5ss
43.6
-0.7
2.6
56.3
42.5
Minor BPS
69
0.59
1.2
69.67
37.9

Associated Gene:

Gene:
PVALB
Ensembl Gene ID:
ENSAPLG00000002414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002425
53869407 - 53877373
7967