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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53890676_53890832_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53890676 - 53890832
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGCATA
5'SS Class:
major
3'SS Sequence:
TCTTGCACCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TTCTCTTGCACC
Flanking Amino Acid:
GAHFQKNYTLIQKRNCVMFF
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
70.7
41.3
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
69.7
0.44
0.8
67.1
33.9
Minor 5ss
41.7
-0.9
3.2
53.5
45.8
Minor BPS
55.7
0.16
1.9
70.68
41.1

Associated Gene:

Gene:
IFT27
Ensembl Gene ID:
ENSAPLG00000002421
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002460
53888566 - 53894504
5939