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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53890676_53891758_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53890676 - 53891758
Intron Length:
1083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGCATA
5'SS Class:
major
3'SS Sequence:
TTCTTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTCCTGATTC
Flanking Amino Acid:
GAHFQKNYTLTTGIELLVKA
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
70.7
41.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85
0.79
0.9
83.2
32
Minor 5ss
41.7
-0.9
3.2
53.5
45.8
Minor BPS
66.6
0.5
1.7
79.35
36

Associated Gene:

Gene:
IFT27
Ensembl Gene ID:
ENSAPLG00000002421
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046107
53888566 - 53900593
12028
ENSAPLT00000041213
53887578 - 53908507
20930
ENSAPLT00000046666
53888566 - 53900612
12047