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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53890866_53891758_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53890866 - 53891758
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTCCTGATTC
Flanking Amino Acid:
QKRNCVMFFYTTGIELLVKA
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
83.8
34.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85
0.79
0.9
83.2
32
Minor 5ss
42.6
-0.8
3.1
63.9
40.4
Minor BPS
66.6
0.5
1.7
79.35
36

Associated Gene:

Gene:
IFT27
Ensembl Gene ID:
ENSAPLG00000002421
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002460
53888566 - 53894504
5939