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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53891819_53892483_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53891819 - 53892483
Intron Length:
665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGGTAT
U12 Branch Point Sequence:
CTGGCAAGAACC
Flanking Amino Acid:
VSVPETSDSVEFFIFDSAGK
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
45.5
-0.2
1.6
43.1
49.2
Major PPT
83.7
0.76
0.8
80.6
31.5
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
42.8
-0.5
2
53.32
43.9

Associated Gene:

Gene:
IFT27
Ensembl Gene ID:
ENSAPLG00000002421
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046107
53888566 - 53900593
12028
ENSAPLT00000041213
53887578 - 53908507
20930
ENSAPLT00000002460
53888566 - 53894504
5939
ENSAPLT00000046666
53888566 - 53900612
12047