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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53893656_53893967_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53893656 - 53893967
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATCAT
U12 Branch Point Sequence:
TTTTCCTTTGTT
Flanking Amino Acid:
RAQAVGMHIPGVLVGNKTDL
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.5
40.6
Major BPS
75.6
0.64
1.1
76.2
37.5
Major PPT
88
0.86
0.6
85
22.7
Minor 5ss
32.9
-2
2.9
40.4
45.3
Minor BPS
48.6
-0
3.6
87.87
37.8

Associated Gene:

Gene:
IFT27
Ensembl Gene ID:
ENSAPLG00000002421
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046107
53888566 - 53900593
12028
ENSAPLT00000041213
53887578 - 53908507
20930
ENSAPLT00000002460
53888566 - 53894504
5939
ENSAPLT00000046666
53888566 - 53900612
12047