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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53894078_53895061_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53894078 - 53895061
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTCAATG
Flanking Amino Acid:
HGLEYCEMSVELSVLHLYHC
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
83.1
28.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
69.6
0.44
1
65
36.3
Minor 5ss
35
-1.7
2.8
42.6
38.5
Minor BPS
69.8
0.48
1.5
75.15
37.2

Associated Gene:

Gene:
IFT27
Ensembl Gene ID:
ENSAPLG00000002421
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046666
53888566 - 53900612
12047
ENSAPLT00000046107
53888566 - 53900593
12028
ENSAPLT00000041213
53887578 - 53908507
20930