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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53895221_53897375_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53895221 - 53897375
Intron Length:
2155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGAATA
5'SS Class:
major
3'SS Sequence:
TGTCTTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
GTCTTCTTACAG
Flanking Amino Acid:
IGVSAEWGHILPYFVQLCML
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
76.3
32.5
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
86
0.81
0.8
80.1
32
Minor 5ss
38.9
-1.2
3.1
51.2
40.4
Minor BPS
50.4
-0.1
1.8
56.62
44.8

Associated Gene:

Gene:
IFT27
Ensembl Gene ID:
ENSAPLG00000002421
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046666
53888566 - 53900612
12047