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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53895221_53900554_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53895221 - 53900554
Intron Length:
5334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGAATA
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
TTTGCTTAAACA
Flanking Amino Acid:
IGVSAEWGHIGVGGQPTHNI
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
76.3
32.5
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
92.2
0.95
0.5
92.5
17.5
Minor 5ss
38.9
-1.2
3.1
51.2
40.4
Minor BPS
66.2
0.5
1.8
78.6
38.6

Associated Gene:

Gene:
IFT27
Ensembl Gene ID:
ENSAPLG00000002421
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046107
53888566 - 53900593
12028