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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53897510_53900554_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53897510 - 53900554
Intron Length:
3045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGAGAT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
TTTGCTTAAACA
Flanking Amino Acid:
GEKTSSIFNCLGWGDNQPII
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
68.4
36.5
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
92.2
0.95
0.5
92.5
17.5
Minor 5ss
35
-1.7
3.6
57.2
46.9
Minor BPS
66.2
0.5
1.8
78.6
38.6

Associated Gene:

Gene:
IFT27
Ensembl Gene ID:
ENSAPLG00000002421
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046666
53888566 - 53900612
12047