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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54040734_54041407_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54040734 - 54041407
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
ATCTTCCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTATTACTAATA
Flanking Amino Acid:
TVKNDNSSRFGKFIRINFDV
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
81.7
31.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
79.9
0.67
0.8
77.5
30.6
Minor 5ss
38.8
-1.3
3
57.3
41.2
Minor BPS
52.8
0.08
1.9
69.95
35.9

Associated Gene:

Gene:
MYH9
Ensembl Gene ID:
ENSAPLG00000007279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007642
54020969 - 54070735
49767