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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54045154_54046084_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54045154 - 54046084
Intron Length:
931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTAC
5'SS Class:
major
3'SS Sequence:
TTCCTCTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TATTTGTTATTT
Flanking Amino Acid:
TDQASMPDNTAAQKVSHLLG
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.2
69.3
38.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
82.4
0.73
0.7
81.3
23.8
Minor 5ss
49.7
-0
2.6
67.4
44
Minor BPS
51.5
0.13
2.2
76.26
41

Associated Gene:

Gene:
MYH9
Ensembl Gene ID:
ENSAPLG00000007279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007642
54020969 - 54070735
49767