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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54047446_54049250_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54047446 - 54049250
Intron Length:
1805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTCTTTCTACCT
Flanking Amino Acid:
LDIAGFEIFELNSFEQLCIN
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
77.3
0.68
1
81.5
27
Major PPT
77.2
0.61
0.9
78.4
30.4
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
51.7
0.13
1.9
75.41
41.9

Associated Gene:

Gene:
MYH9
Ensembl Gene ID:
ENSAPLG00000007279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007642
54020969 - 54070735
49767