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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54049425_54049721_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54049425 - 54049721
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AAGTATTTAATG
Flanking Amino Acid:
QPCIDLIEKPAGPPGILALL
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
70.2
40.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.6
0.55
1
78.6
27.5
Minor 5ss
34.3
-1.8
3
44.9
42.8
Minor BPS
55.5
0.04
1.5
55.72
40

Associated Gene:

Gene:
MYH9
Ensembl Gene ID:
ENSAPLG00000007279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007642
54020969 - 54070735
49767