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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54050581_54052973_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54050581 - 54052973
Intron Length:
2393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTGCTCTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TGTGGCAGAACT
Flanking Amino Acid:
DKFVSELWKDVDRIVGLDQV
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
80
34.6
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
71.2
0.48
0.9
62.6
39.7
Minor 5ss
44
-0.7
2.6
60.3
44.3
Minor BPS
46.3
-0.2
2.2
70.75
45.5

Associated Gene:

Gene:
MYH9
Ensembl Gene ID:
ENSAPLG00000007279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007642
54020969 - 54070735
49767