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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54053168_54053269_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54053168 - 54053269
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGAG
5'SS Class:
major
3'SS Sequence:
TTCTCCTCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
GTATTTATAATT
Flanking Amino Acid:
RCIIPNHEKKAGKLDPHLVL
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.3
39.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
72.9
0.51
0.8
67.3
33.9
Minor 5ss
27.9
-2.5
3.5
36.8
47.7
Minor BPS
58.4
0.34
1.5
73.98
36.9

Associated Gene:

Gene:
MYH9
Ensembl Gene ID:
ENSAPLG00000007279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007642
54020969 - 54070735
49767