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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54053392_54053768_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54053392 - 54053768
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TACTTTTTACTC
Flanking Amino Acid:
NRVVFQEFRQRYEILTPNAI
Intron Amino Acid Position:
678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
35.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
88
0.86
0.7
85.7
28.5
Minor 5ss
34.3
-1.8
3.3
49.5
46.5
Minor BPS
55
0.14
1.6
62.03
38.4

Associated Gene:

Gene:
MYH9
Ensembl Gene ID:
ENSAPLG00000007279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007642
54020969 - 54070735
49767