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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54053839_54054800_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54053839 - 54054800
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATTT
Flanking Amino Acid:
MDGKQACVLMIKALELDSNL
Intron Amino Acid Position:
702

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.3
40.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.8
0.76
0.7
82.4
27.8
Minor 5ss
32.6
-2
3.4
44.3
44.6
Minor BPS
62.3
0.47
1.8
83.64
37.8

Associated Gene:

Gene:
MYH9
Ensembl Gene ID:
ENSAPLG00000007279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007642
54020969 - 54070735
49767