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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54054962_54055694_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54054962 - 54055694
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
CTGACCTCCACT
Flanking Amino Acid:
QACCRGYLARKAFAKRQQQL
Intron Amino Acid Position:
755

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
73.3
34.3
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
86.5
0.82
0.7
81.1
30.1
Minor 5ss
35.2
-1.7
3.1
44.8
36.8
Minor BPS
49
0
2.1
68.76
47.7

Associated Gene:

Gene:
MYH9
Ensembl Gene ID:
ENSAPLG00000007279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007642
54020969 - 54070735
49767