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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54060706_54061164_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54060706 - 54061164
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTGAATTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
AGACTCTGAATT
Flanking Amino Acid:
LDSTAAQQELRSKREQEVTV
Intron Amino Acid Position:
1120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
78
38.6
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
75.7
0.58
1
69
41.4
Minor 5ss
43.3
-0.7
2.9
58.9
45.5
Minor BPS
54.6
0.22
1.4
66.56
37.6

Associated Gene:

Gene:
MYH9
Ensembl Gene ID:
ENSAPLG00000007279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007642
54020969 - 54070735
49767