About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54065076_54065481_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54065076 - 54065481
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AAATTCTCAAAA
Flanking Amino Acid:
LEKKQKKFDQLLAEEKNISA
Intron Amino Acid Position:
1407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
77.2
37.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
83.4
0.75
0.7
81.7
30.3
Minor 5ss
44
-0.7
3.1
65.1
46.1
Minor BPS
53.4
0.1
1.6
61.71
37.4

Associated Gene:

Gene:
MYH9
Ensembl Gene ID:
ENSAPLG00000007279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007642
54020969 - 54070735
49767