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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54066582_54066904_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54066582 - 54066904
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
AACACCTGAATT
Flanking Amino Acid:
EEKRKQLIRQVREMEVELED
Intron Amino Acid Position:
1549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
80.9
31
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
84.4
0.77
0.8
79.9
32.1
Minor 5ss
37.8
-1.4
3
51.4
38.8
Minor BPS
59
0.36
1.5
69.59
41.1

Associated Gene:

Gene:
MYH9
Ensembl Gene ID:
ENSAPLG00000007279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007642
54020969 - 54070735
49767