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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54067067_54067760_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54067067 - 54067760
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATCCAT
U12 Branch Point Sequence:
AGACTTGGAAAT
Flanking Amino Acid:
EAIKQLRKLQAQMKDYMREL
Intron Amino Acid Position:
1603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
60.7
0.27
1.2
70.5
35.7
Major PPT
82.5
0.73
0.7
80.8
24.3
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
39.3
-0.7
1.9
51.45
36

Associated Gene:

Gene:
MYH9
Ensembl Gene ID:
ENSAPLG00000007279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007642
54020969 - 54070735
49767