About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54067890_54068241_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54067890 - 54068241
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGGAA
5'SS Class:
major
3'SS Sequence:
GTTTTCATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCGTTTTCATTC
Flanking Amino Acid:
MEAEMIQLQEELAAAERAKR
Intron Amino Acid Position:
1646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.2
Major BPS
100
1.24
0.5
100
0
Major PPT
83.3
0.75
0.9
74.5
40
Minor 5ss
28.6
-2.5
3.5
37.7
47.1
Minor BPS
46.2
-0.3
1.7
53.02
39.9

Associated Gene:

Gene:
MYH9
Ensembl Gene ID:
ENSAPLG00000007279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007642
54020969 - 54070735
49767