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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54068331_54068533_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54068331 - 54068533
Intron Length:
203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTGTGTCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTGTCTTACAG
Flanking Amino Acid:
ADEIANSSGKGALAMEEKRR
Intron Amino Acid Position:
1675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
83.1
30.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
76.4
0.59
1
68.8
42.1
Minor 5ss
31.5
-2.1
2.7
34
41.5
Minor BPS
48.6
-0.2
1.9
56.62
44.8

Associated Gene:

Gene:
MYH9
Ensembl Gene ID:
ENSAPLG00000007279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007642
54020969 - 54070735
49767