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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54068658_54069717_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54068658 - 54069717
Intron Length:
1060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGTT
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCGATAT
U12 Branch Point Sequence:
CTTCTCTCCACA
Flanking Amino Acid:
NDRLKKANLQIDQMNADLNA
Intron Amino Acid Position:
1717

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
76.4
39.6
Major BPS
51.5
0.04
1.3
49
44.8
Major PPT
81.3
0.71
0.7
76
26.2
Minor 5ss
43.1
-0.8
3.5
67
44.3
Minor BPS
48.6
-0.1
2
64.43
42.1

Associated Gene:

Gene:
MYH9
Ensembl Gene ID:
ENSAPLG00000007279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007642
54020969 - 54070735
49767