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Intron Name: Anas_platyrhynchos_platyrhynchos_1_54080171_54172989_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54080171 - 54172989

Intron Length:

92819

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAAGG

5'SS Class:

strong_major

3'SS Sequence:

CTCCTTTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTAAA

U12 Branch Point Sequence:

GTGTAGTAAAGC

Flanking Amino Acid:

EAEAEGGGMQGNQEPAATPD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

68.8

42.1

Major BPS

67.4

0.43

1.1

67.9

36.3

Major PPT

83.8

0.76

0.7

76.2

32.4

Minor 5ss

32.2

-2

40.4

45.3

Minor BPS

39.4

-0.8

2.5

51.47

45.5

Associated Gene:

Gene:

RBFOX2

Ensembl Gene ID:

ENSAPLG00000007609

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028915

54079988 - 54225773

145786