About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54110110_54172989_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54110110 - 54172989
Intron Length:
62880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
GTGTAGTAAAGC
Flanking Amino Acid:
YHGYPARDNQGNQEPAATPD
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.1
31.5
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
83.8
0.76
0.7
76.2
32.4
Minor 5ss
36.7
-1.5
3.5
51
39.9
Minor BPS
39.4
-0.8
2.5
51.47
45.5

Associated Gene:

Gene:
RBFOX2
Ensembl Gene ID:
ENSAPLG00000007609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042647
54079988 - 54225773
145786
ENSAPLT00000017261
54079988 - 54225773
145786
ENSAPLT00000007911
54079988 - 54226818
146831