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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5411620_5417282_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5411620 - 5417282
Intron Length:
5663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGTAA
5'SS Class:
major
3'SS Sequence:
CAAATGCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTTTGTAAAG
Flanking Amino Acid:
VGLNNINALAGMAALNGGLG
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
63
40
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
63.1
0.3
1
58
42.5
Minor 5ss
40.5
-1.1
3.4
55.4
48.8
Minor BPS
52.8
-0
2.1
67.62
40.4

Associated Gene:

Gene:
CELF2
Ensembl Gene ID:
ENSAPLG00000010064
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034517
5061983 - 5428458
366476
ENSAPLT00000031223
5188947 - 5428458
239512
ENSAPLT00000030189
5188947 - 5428090
239144
ENSAPLT00000010552
5188947 - 5426764
237818