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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5411632_5417282_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5411632 - 5417282
Intron Length:
5651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
CAAATGCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTTTGTAAAG
Flanking Amino Acid:
NINALAGTVNSMAALNGGLG
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
81
32.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
63.1
0.3
1
58
42.5
Minor 5ss
38.4
-1.3
3
57
41.2
Minor BPS
52.8
-0
2.1
67.62
40.4

Associated Gene:

Gene:
CELF2
Ensembl Gene ID:
ENSAPLG00000010064
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028650
5175313 - 5426764
251452