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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54161066_54172989_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54161066 - 54172989
Intron Length:
11924

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGGACA
5'SS Class:
major
3'SS Sequence:
CTCCTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
GTGTAGTAAAGC
Flanking Amino Acid:
MDLQLACPDGNQEPAATPD
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
74.4
35.6
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
83.8
0.76
0.7
76.2
32.4
Minor 5ss
35
-1.7
3.2
45.6
42.5
Minor BPS
39.4
-0.8
2.5
51.47
45.5

Associated Gene:

Gene:
RBFOX2
Ensembl Gene ID:
ENSAPLG00000007609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039746
54160935 - 54225773
64839