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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54173215_54182448_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54173215 - 54182448
Intron Length:
9234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TTTCTGATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTTTCTGATTT
Flanking Amino Acid:
TASTQNGSLAQTEGGAQTDG
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
84.3
0.77
0.8
81.7
34.6
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
57.7
0.32
1.7
75.98
41.3

Associated Gene:

Gene:
RBFOX2
Ensembl Gene ID:
ENSAPLG00000007609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025821
54156608 - 54226808
70201
ENSAPLT00000033515
54156608 - 54225773
69166
ENSAPLT00000017261
54079988 - 54225773
145786
ENSAPLT00000028915
54079988 - 54225773
145786
ENSAPLT00000007911
54079988 - 54226818
146831
ENSAPLT00000027919
54152773 - 54225773
73001
ENSAPLT00000042647
54079988 - 54225773
145786
ENSAPLT00000026337
54156608 - 54225773
69166
ENSAPLT00000039746
54160935 - 54225773
64839