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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5417463_5420217_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5417463 - 5420217
Intron Length:
2755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
GTTTTCCTAAAG
Flanking Amino Acid:
QQSAAGSQKEGPEGANLFIY
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
75.1
0.56
1
75.6
33.4
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
56.4
0.06
1.9
66.14
41.1

Associated Gene:

Gene:
CELF2
Ensembl Gene ID:
ENSAPLG00000010064
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030189
5188947 - 5428090
239144
ENSAPLT00000028650
5175313 - 5426764
251452
ENSAPLT00000010552
5188947 - 5426764
237818
ENSAPLT00000034517
5061983 - 5428458
366476
ENSAPLT00000031223
5188947 - 5428458
239512