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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54182596_54195117_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54182596 - 54195117
Intron Length:
12522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTTTTCTTCTTT
Flanking Amino Acid:
RDPDLRQMFGQFGKILDVEI
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
75.8
35
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
83
0.74
0.8
77.2
31.6
Minor 5ss
41
-1
2.7
45.9
42.3
Minor BPS
46
-0.2
3.6
82.89
39.2

Associated Gene:

Gene:
RBFOX2
Ensembl Gene ID:
ENSAPLG00000007609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025821
54156608 - 54226808
70201
ENSAPLT00000033515
54156608 - 54225773
69166
ENSAPLT00000017261
54079988 - 54225773
145786
ENSAPLT00000028915
54079988 - 54225773
145786
ENSAPLT00000007911
54079988 - 54226818
146831
ENSAPLT00000027919
54152773 - 54225773
73001
ENSAPLT00000042647
54079988 - 54225773
145786
ENSAPLT00000026337
54156608 - 54225773
69166
ENSAPLT00000039746
54160935 - 54225773
64839