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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54195172_54204449_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54195172 - 54204449
Intron Length:
9278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CCGCTGCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAACGAT
U12 Branch Point Sequence:
TCCCGCTGCATG
Flanking Amino Acid:
EIIFNERGSKGFGFVTFENS
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
54.2
0.11
1.3
52.8
42.7
Major PPT
64.7
0.33
1
57.6
37.6
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
38.9
-1
2.2
40.83
44

Associated Gene:

Gene:
RBFOX2
Ensembl Gene ID:
ENSAPLG00000007609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025821
54156608 - 54226808
70201
ENSAPLT00000033515
54156608 - 54225773
69166
ENSAPLT00000017261
54079988 - 54225773
145786
ENSAPLT00000028915
54079988 - 54225773
145786
ENSAPLT00000007911
54079988 - 54226818
146831
ENSAPLT00000027919
54152773 - 54225773
73001
ENSAPLT00000042647
54079988 - 54225773
145786
ENSAPLT00000026337
54156608 - 54225773
69166
ENSAPLT00000039746
54160935 - 54225773
64839