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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54204543_54207298_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54204543 - 54207298
Intron Length:
2756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCATGTC
5'SS Class:
major
3'SS Sequence:
TTCTTGCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCTT
U12 Branch Point Sequence:
TTCCCCTTTCTT
Flanking Amino Acid:
GTVVEGRKIEVNNATARVMT
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
69.2
35.7
Major BPS
34.7
-0.9
4.2
75
39.9
Major PPT
82.7
0.74
0.8
81.2
30.9
Minor 5ss
30.1
-2.3
3.5
43
44.6
Minor BPS
42.7
-0.4
3.6
73.25
43.8

Associated Gene:

Gene:
RBFOX2
Ensembl Gene ID:
ENSAPLG00000007609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026337
54156608 - 54225773
69166
ENSAPLT00000039746
54160935 - 54225773
64839
ENSAPLT00000025821
54156608 - 54226808
70201
ENSAPLT00000033515
54156608 - 54225773
69166
ENSAPLT00000017261
54079988 - 54225773
145786
ENSAPLT00000028915
54079988 - 54225773
145786
ENSAPLT00000007911
54079988 - 54226818
146831
ENSAPLT00000027919
54152773 - 54225773
73001
ENSAPLT00000042647
54079988 - 54225773
145786