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Intron Name: Anas_platyrhynchos_platyrhynchos_1_54207360_54209802_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54207360 - 54209802

Intron Length:

2443

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAGAG

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTGTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTCAC

U12 Branch Point Sequence:

TTGGCATTCACT

Flanking Amino Acid:

NKKMVTPYANGWKLSPVVGA

Intron Amino Acid Position:

272

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.76

0.9

67.8

37.5

Major BPS

69.9

0.5

31.5

Major PPT

85.6

0.8

0.9

80.6

Minor 5ss

29.9

-2.3

3.3

35.1

42.4

Minor BPS

52.7

0.17

2.2

76.77

45.6

Associated Gene:

Gene:

RBFOX2

Ensembl Gene ID:

ENSAPLG00000007609

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025821

54156608 - 54226808

70201

ENSAPLT00000039746

54160935 - 54225773

64839

ENSAPLT00000017261

54079988 - 54225773

145786

ENSAPLT00000028915

54079988 - 54225773

145786

ENSAPLT00000007911

54079988 - 54226818

146831

ENSAPLT00000027919

54152773 - 54225773

73001

ENSAPLT00000026337

54156608 - 54225773

69166

ENSAPLT00000042647

54079988 - 54225773

145786