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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54207360_54210017_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
54207360 - 54210017
Intron Length:
2658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
AAAATTAAATTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTCTAAAAT
Flanking Amino Acid:
NKKMVTPYANASSFQADVSL
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
67.8
37.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
49.6
-0
1.1
46.9
43.9
Minor 5ss
29.9
-2.3
3.3
35.1
42.4
Minor BPS
63.2
0.49
1.8
80.39
41.7

Associated Gene:

Gene:
RBFOX2
Ensembl Gene ID:
ENSAPLG00000007609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033515
54156608 - 54225773
69166