About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54209857_54210017_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
54209857 - 54210017
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGCTT
5'SS Class:
major
3'SS Sequence:
AAAATTAAATTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTCTAAAAT
Flanking Amino Acid:
GAVYGPELYAASSFQADVSL
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
66.7
44.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
49.6
-0
1.1
46.9
43.9
Minor 5ss
34.6
-1.7
3.8
55.3
48.9
Minor BPS
63.2
0.49
1.8
80.39
41.7

Associated Gene:

Gene:
RBFOX2
Ensembl Gene ID:
ENSAPLG00000007609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025821
54156608 - 54226808
70201
ENSAPLT00000039746
54160935 - 54225773
64839
ENSAPLT00000017261
54079988 - 54225773
145786
ENSAPLT00000028915
54079988 - 54225773
145786
ENSAPLT00000007911
54079988 - 54226818
146831
ENSAPLT00000027919
54152773 - 54225773
73001
ENSAPLT00000026337
54156608 - 54225773
69166