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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54209857_54211261_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54209857 - 54211261
Intron Length:
1405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGCTT
5'SS Class:
major
3'SS Sequence:
TCTGTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCCTTTTCACCC
Flanking Amino Acid:
GAVYGPELYAVPGFPYPTAA
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
66.7
44.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
85
0.79
0.8
76.7
37.4
Minor 5ss
34.6
-1.7
3.8
55.3
48.9
Minor BPS
47.7
-0.1
1.8
57
42.6

Associated Gene:

Gene:
RBFOX2
Ensembl Gene ID:
ENSAPLG00000007609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042647
54079988 - 54225773
145786