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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54210111_54211261_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54210111 - 54211261
Intron Length:
1151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TCTGTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCCTTTTCACCC
Flanking Amino Acid:
GGINTYIPLIIPGFPYPTAA
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
85
0.79
0.8
76.7
37.4
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
47.7
-0.1
1.8
57
42.6

Associated Gene:

Gene:
RBFOX2
Ensembl Gene ID:
ENSAPLG00000007609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025821
54156608 - 54226808
70201
ENSAPLT00000033515
54156608 - 54225773
69166
ENSAPLT00000017261
54079988 - 54225773
145786
ENSAPLT00000028915
54079988 - 54225773
145786
ENSAPLT00000007911
54079988 - 54226818
146831
ENSAPLT00000027919
54152773 - 54225773
73001
ENSAPLT00000026337
54156608 - 54225773
69166
ENSAPLT00000039746
54160935 - 54225773
64839