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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54211395_54216849_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54211395 - 54216849
Intron Length:
5455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
GGATTTTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGGAT
U12 Branch Point Sequence:
TTTGTGTGGATT
Flanking Amino Acid:
VPPTAIPAYPGVVYQDGFYG
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
75.3
40.8
Major BPS
56.3
0.16
1.5
57.1
49.4
Major PPT
76.1
0.59
1
69.8
41.3
Minor 5ss
41.6
-0.9
2.9
51
45.2
Minor BPS
45.8
-0.2
2.2
70.54
41.3

Associated Gene:

Gene:
RBFOX2
Ensembl Gene ID:
ENSAPLG00000007609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025821
54156608 - 54226808
70201
ENSAPLT00000042647
54079988 - 54225773
145786
ENSAPLT00000017261
54079988 - 54225773
145786
ENSAPLT00000033515
54156608 - 54225773
69166
ENSAPLT00000028915
54079988 - 54225773
145786
ENSAPLT00000026337
54156608 - 54225773
69166