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Intron Name: Anas_platyrhynchos_platyrhynchos_1_54216890_54224463_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54216890 - 54224463

Intron Length:

7574

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTAAGTACA

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTAAA

U12 Branch Point Sequence:

GTATCTGTAAAG

Flanking Amino Acid:

QDGFYGADLYGGYAAYRYAQ

Intron Amino Acid Position:

379

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

82.7

29.2

Major BPS

62.9

0.32

1.2

65.3

38.6

Major PPT

86.1

0.81

0.7

81.1

Minor 5ss

38.4

-1.3

2.7

48.5

40.3

Minor BPS

48.7

-0.2

2.1

58.21

43.2

Associated Gene:

Gene:

RBFOX2

Ensembl Gene ID:

ENSAPLG00000007609

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028915

54079988 - 54225773

145786

ENSAPLT00000026337

54156608 - 54225773

69166

ENSAPLT00000025821

54156608 - 54226808

70201

ENSAPLT00000042647

54079988 - 54225773

145786

ENSAPLT00000017261

54079988 - 54225773

145786

ENSAPLT00000033515

54156608 - 54225773

69166