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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54245101_54248576_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54245101 - 54248576
Intron Length:
3476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCAAG
5'SS Class:
major
3'SS Sequence:
CTTCTGTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAA
U12 Branch Point Sequence:
AGCCTCACAAGT
Flanking Amino Acid:
LAGHGHAVLMRLFQDHPETL
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.8
43.8
Major BPS
63.3
0.33
1.2
67
39.8
Major PPT
77.7
0.62
0.8
71.8
32.8
Minor 5ss
37.3
-1.4
3.1
47.3
48.3
Minor BPS
40.8
-0.6
1.9
53.58
41.3

Associated Gene:

Gene:
MB
Ensembl Gene ID:
ENSAPLG00000007648
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007939
54245006 - 54250383
5378