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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54280544_54284463_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
54280544 - 54284463
Intron Length:
3920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGCCAT
U12 Branch Point Sequence:
TTTCCTCCAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
49.9
-0
1.4
61.8
44.5
Major PPT
84.7
0.78
0.7
76.7
32
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
58
0.33
1.9
82.83
37.9

Associated Gene:

Gene:
RASD2
Ensembl Gene ID:
ENSAPLG00000007921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008213
54278143 - 54284937
6795