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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54334147_54334270_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54334147 - 54334270
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGATGG
5'SS Class:
major
3'SS Sequence:
TCTTCTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
ATTCTCTCACCC
Flanking Amino Acid:
HSIVQDFMRQKYPEHAIYKV
Intron Amino Acid Position:
796

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
59.6
42
Major BPS
72.7
0.56
1
75
30.1
Major PPT
88.2
0.86
0.7
80.8
31.2
Minor 5ss
30.8
-2.2
3.2
38.5
46.5
Minor BPS
50.8
0.01
1.8
66.27
39.1

Associated Gene:

Gene:
MCM5
Ensembl Gene ID:
ENSAPLG00000007931
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008297
54334045 - 54342393
8349