Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54334399_54334508_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54334399 - 54334508

Intron Length:

110

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCATG

5'SS Class:

strong_major

3'SS Sequence:

CCTCTCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTCAC

U12 Branch Point Sequence:

GCTCACACAACC

Flanking Amino Acid:

LDAAMSGSLSGAEGFTTQED

Intron Amino Acid Position:

753

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

77.8

38.7

Major BPS

0.28

1.1

63.1

35.8

Major PPT

74.2

0.54

0.7

65.3

30.5

Minor 5ss

37.5

-1.4

47.8

47.9

Minor BPS

44.6

-0.4

1.9

55.54

41.7

Associated Gene:

Gene:

MCM5

Ensembl Gene ID:

ENSAPLG00000007931

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008297

54334045 - 54342393

8349