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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54337497_54337613_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54337497 - 54337613
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGAGA
5'SS Class:
major
3'SS Sequence:
CCTGCTGCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAC
U12 Branch Point Sequence:
TCCTCTGTATCT
Flanking Amino Acid:
ACLLFGGSRKRLPDGLTRRG
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.7
41.7
Major BPS
65.1
0.38
1.4
77.4
37.4
Major PPT
66.9
0.38
0.9
57.8
38.6
Minor 5ss
24.8
-2.9
3.1
30.4
43
Minor BPS
48.9
-0
2.2
70.73
46.8

Associated Gene:

Gene:
MCM5
Ensembl Gene ID:
ENSAPLG00000007931
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008297
54334045 - 54342393
8349