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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54337786_54338421_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54337786 - 54338421
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCATTCTGACCT
Flanking Amino Acid:
VGIQVDTEGSGHSFAGSVTP
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
71.8
0.49
0.8
66.6
28.5
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
55.6
0.25
1.8
73.08
43.7

Associated Gene:

Gene:
MCM5
Ensembl Gene ID:
ENSAPLG00000007931
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008297
54334045 - 54342393
8349