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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_54338589_54338715_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54338589 - 54338715
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGCA
5'SS Class:
major
3'SS Sequence:
TTTCTTCTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTTGCTTTCACC
Flanking Amino Acid:
MPRHLQLYCDRYLCDKVVPG
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
59.8
39.5
Major BPS
77.7
0.69
1
81
30.2
Major PPT
85.1
0.79
0.6
85.1
22.4
Minor 5ss
35.2
-1.7
3.5
48.6
47
Minor BPS
64.6
0.44
1.9
77.59
39

Associated Gene:

Gene:
MCM5
Ensembl Gene ID:
ENSAPLG00000007931
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008297
54334045 - 54342393
8349